Kutmon, Martina: search on Z-Library

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1

Stratifying cellular metabolism during weight loss: an interplay of metabolism, metabolic flexibility and inflammation

Tareen, Samar H. K., Kutmon, Martina, de Kok, Theo M., Mariman, Edwin C. M., van Baak, Marleen A., Evelo, Chris T., Adriaens, Michiel E., Arts, Ilja C. W.

Journal:

Scientific Reports

Year:

2020

Language:

english

File:

PDF, 1.10 MB

english, 2020

2

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

Slenter, Denise N, Kutmon, Martina, Hanspers, Kristina, Riutta, Anders, Windsor, Jacob, Nunes, Nuno, Mélius, Jonathan, Cirillo, Elisa, Coort, Susan L, Digles, Daniela, Ehrhart, Friederike, Giesbertz,

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 839 KB

english, 2018

3

Comprehensive bioinformatics analysis of trabecular meshwork gene expression data to unravel the molecular pathogenesis of primary open‐angle glaucoma

Liesenborghs, Ilona, Eijssen, Lars M. T., Kutmon, Martina, Gorgels, Theo G. M. F., Evelo, Chris T., Beckers, Henny J. M., Webers, Carroll A. B., Schouten, Johannes S. A. G.

Journal:

Acta Ophthalmologica (Blackwell)

Year:

2019

Language:

english

File:

PDF, 815 KB

english, 2019

4

The Molecular Processes in the Trabecular Meshwork After Exposure to Corticosteroids and in Corticosteroid-Induced Ocular Hypertension

Liesenborghs, Ilona, Eijssen, Lars M. T., Kutmon, Martina, Gorgels, Theo G. M. F., Evelo, Chris T., Beckers, Henny J. M., Webers, Carroll A. B., Schouten, Johannes S. A. G.

Journal:

Investigative Opthalmology & Visual Science

Year:

2020

File:

PDF, 3.22 MB

2020

5

The Importance of Modularity in Bioinformatics Tools

Kutmon, Martina, van Iersel, Martijn, Kelder, Thomas, Evelo, Chris

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 241 KB

english, 2011

6

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

Miller, Ryan A., Ehrhart, Friederike, Eijssen, Lars M. T., Slenter, Denise N., Curfs, Leopold M. G., Evelo, Chris T., Willighagen, Egon L., Kutmon, Martina

Journal:

Frontiers in Genetics

Year:

2019

File:

PDF, 2.86 MB

2019

7

Integrated visualization of a multi-omics study of starvation in mouse intestine

Iersel, Martijn P. van, Sokolović, Milka, Lenaerts, Kaatje, Kutmon, Martina, Bouwman, Freek G., Lamers, Wouter H., Mariman, Edwin C.M., Evelo, Chris T.

Journal:

Journal of Integrative Bioinformatics

Year:

2014

Language:

english

File:

PDF, 465 KB

english, 2014

8

The systems biology format converter

Rodriguez, Nicolas, Pettit, Jean-Baptiste, Dalle Pezze, Piero, Li, Lu, Henry, Arnaud, van Iersel, Martijn P., Jalowicki, Gael, Kutmon, Martina, Natarajan, Kedar N., Tolnay, David, Stefan, Melanie I.,

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.90 MB

english, 2016

9

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources

Waagmeester, Andra, Kutmon, Martina, Riutta, Anders, Miller, Ryan, Willighagen, Egon L., Evelo, Chris T., Pico, Alexander R., Ouzounis, Christos A.

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 974 KB

english, 2016

10

SBFC - The Systems Biology Format Converter Framework

Kutmon, Martina, Rodriguez, Nicolas

Journal:

Bioentrepreneur

Year:

2011

Language:

english

File:

PDF, 249 KB

english, 2011

11

Pathway information extracted from 25 years of pathway figures

Hanspers, Kristina, Riutta, Anders, Summer-Kutmon, Martina, Pico, Alexander R.

Journal:

Year:

2020

File:

PDF, 1.69 MB

2020

12

A pathway approach to investigate the function and regulation of SREBPs

Sabine Daemen, Martina Kutmon, Chris T. Evelo

Journal:

Genes & Nutrition

Year:

2013

Language:

english

File:

PDF, 394 KB

english, 2013

13

WikiPathways: capturing the full diversity of pathway knowledge

Kutmon, Martina, Riutta, Anders, Nunes, Nuno, Hanspers, Kristina, Willighagen, Egon L., Bohler, Anwesha, Mélius, Jonathan, Waagmeester, Andra, Sinha, Sravanthi R., Miller, Ryan, Coort, Susan L., Ciril

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

14

CyTargetLinker: A Cytoscape App to Integrate Regulatory Interactions in Network Analysis

Kutmon, Martina, Kelder, Thomas, Mandaviya, Pooja, Evelo, Chris T. A., Coort, Susan L., Vera, Julio

Journal:

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

15

The System Biology Format Converter

Jalowicki, Gaël, Rodriguez, Nicolas, Kutmon, Martina, Pettit, Jean-Baptiste, Li, Lu, Henry, Arnaud, Nath Natarajan, Kedar, Laibe, Camille, Evelo, Chris T., Le Novère, Nicolas

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 11.75 MB

2011

16

The Importance of Modularity in Bioinformatics Tools

Kutmon, Martina, van Iersel, Martijn, Kelder, Thomas, Evelo, Chris

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 241 KB

2011

17

Improving metabolite evaluation in integrated pathway analysis

Kaur, Rasanpreet, Dutta, Anwesha, Kutmon, Martina, Iersel, Martijn, Evelo, Chris

Journal:

Bioentrepreneur

Year:

2012

File:

PDF, 4.92 MB

2012

18

Integrative network-based analysis of mRNA and microRNA expression in 1,25-dihydroxyvitamin D3-treated cancer cells

Kutmon, Martina, Coort, Susan L., de Nooijer, Kim, Lemmens, Claire, Evelo, Chris T.

Journal:

Genes & Nutrition

Year:

2015

Language:

english

File:

PDF, 2.17 MB

english, 2015

19

SBFC - The Systems Biology Format Converter Framework

Kutmon, Martina, Rodriguez, Nicolas

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 249 KB

2011

20

Pathway analysis of transcriptomic data shows immunometabolic effects of vitamin D

Muñoz Garcia, Amadeo, Kutmon, Martina, Eijssen, Lars, Hewison, Martin, Evelo, Chris T., Coort, Susan L.

Journal:

Journal of Molecular Endocrinology

Year:

2017

Language:

english

File:

PDF, 1.60 MB

english, 2017

21

Sexual dimorphism, age and fat mass are key phenotypic drivers of proteomic signatures

Curran, Aoife M, Fogarty Draper, Colleen, Scott-Boyer, Marie-Pier, Valsesia, Armand, Roche, Helen M., Ryan, Miriam F, Gibney, Michael J., Kutmon, Martina, Evelo, Chris T., Coort, Susan L., Astrup, Arn

Journal:

Journal of Proteome Research

Year:

2017

Language:

english

File:

PDF, 796 KB

english, 2017

22

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome

Miller, Ryan A., Ehrhart, Friederike, Eijssen, Lars M. T., Slenter, Denise N., Curfs, Leopold M. G., Evelo, Chris T., Willighagen, Egon L., Kutmon, Martina

Journal:

Frontiers in Genetics

Year:

2019

Language:

english

File:

PDF, 2.86 MB

english, 2019

23

Exploring the cellular network of metabolic flexibility in the adipose tissue

Tareen, Samar H. K., Kutmon, Martina, Adriaens, Michiel E., Mariman, Edwin C. M., de Kok, Theo M., Arts, Ilja C. W., Evelo, Chris T.

Journal:

Genes & Nutrition

Year:

2018

Language:

english

File:

PDF, 988 KB

english, 2018

24

Improving metabolite evaluation in integrated pathway analysis

Kaur, Rasanpreet, Dutta, Anwesha, Kutmon, Martina, Iersel, Martijn, Evelo, Chris

Journal:

Bioentrepreneur

Year:

2012

File:

PDF, 4.92 MB

2012

25

Identification of Biological Pathways Contributing to Marbling in Skeletal Muscle to Improve Beef Cattle Breeding

Roudbari, Zahra, Coort, Susan L., Kutmon, Martina, Eijssen, Lars, Melius, Jonathan, Sadkowski, Tomasz, Evelo, Chris T.

Journal:

Frontiers in Genetics

Year:

2020

Language:

english

File:

PDF, 2.80 MB

english, 2020

26

PathVisio 3: An Extendable Pathway Analysis Toolbox

Kutmon, Martina, van Iersel, Martijn P., Bohler, Anwesha, Kelder, Thomas, Nunes, Nuno, Pico, Alexander R., Evelo, Chris T., Murphy, Robert F.

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 1.66 MB

english, 2015

27

Visualizing the regulatory role of Angiopoietin-like protein 8 (ANGPTL8) in glucose and lipid metabolic pathways

Siddiqa, Amnah, Cirillo, Elisa, Tareen, Samar H.K., Ali, Amjad, Kutmon, Martina, Eijssen, Lars M.T., Ahmad, Jamil, Evelo, Chris T., Coort, Susan L.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.00 MB

english, 2017

28

From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results

Cirillo, Elisa, Kutmon, Martina, Gonzalez Hernandez, Manuel, Hooimeijer, Tom, Adriaens, Michiel E., Eijssen, Lars M. T., Parnell, Laurence D., Coort, Susan L., Evelo, Chris T., Huang, Qingyang

Journal:

Year:

2018

Language:

english

File:

PDF, 1.75 MB

english, 2018

29

Profiling Cellular Processes in Adipose Tissue during Weight Loss Using Time Series Gene Expression

Tareen, Samar, Adriaens, Michiel, Arts, Ilja, de Kok, Theo, Vink, Roel, Roumans, Nadia, van Baak, Marleen, Mariman, Edwin, Evelo, Chris, Kutmon, Martina

Journal:

Year:

2018

Language:

english

File:

PDF, 685 KB

english, 2018

30

Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment

Bohler, Anwesha, Eijssen, Lars M. T., van Iersel, Martijn P., Leemans, Christ, Willighagen, Egon L., Kutmon, Martina, Jaillard, Magali, Evelo, Chris T.

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.03 MB

english, 2015

31

The System Biology Format Converter

Jalowicki, Gaël, Rodriguez, Nicolas, Kutmon, Martina, Pettit, Jean-Baptiste, Li, Lu, Henry, Arnaud, Nath Natarajan, Kedar, Laibe, Camille, Evelo, Chris T., Le Novère, Nicolas

Journal:

Bioentrepreneur

Year:

2011

File:

PDF, 11.75 MB

2011

32

A network biology workflow to study transcriptomics data of the diabetic liver

Kutmon, Martina, Evelo, Chris T, Coort, Susan L

Journal:

Year:

2014

Language:

english

File:

PDF, 2.16 MB

english, 2014

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